BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= BA0AB009D02SP1|AL426017
(818 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig543 801 0.0
3x_Contig559 179 6e-45
>3x_Contig543
Length = 2970
Score = 801 bits (402), Expect = 0.0
Identities = 413/418 (98%), Gaps = 1/418 (0%)
Strand = Plus / Plus
Query: 402 gatccatttacgggagactaattggccatatgatgcgcttatccagctcgtatatccaag 461
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10 gatccatttacgggagactaattggccatatgatgcgcttatccagctcgtatatccaag 69
Query: 462 gkaattgacatgaagatagtttttcctggkaataattagcatcaacattgcaacatagaa 521
| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 70 gtaattgacatgaagatagtttttcctggtaataattagcatcaacattgcaacatagaa 129
Query: 522 agataatatttttactggccataacagtaatttctgagatttcgacaactcccattgtgt 581
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 130 agataatatttttactggccataacagtaatttctgagatttcgacaactcccattgtgt 189
Query: 582 cgtaatggttgtrattaaaccgacaagtaccgctgttttgaagagtaaacccctggcgaa 641
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 190 cgtaatggttgtaattaaaccgacaagtaccgctgttttgaagagtaaacccctggcgaa 249
Query: 642 attattaaacctgctcttgcataccccactgaatatccgatggtaagtaaaacgagaatc 701
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 250 attattaaacctgctcttgcataccccactgaatatccgatggtaagtaaaacgagaatc 309
Query: 702 acgcagttgcggtgc-acsggtcctaaactctgcacgtaagacatcaatgaaaacaaacc 760
||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||
Sbjct: 310 acgcagttgcggtgcaaccggtcctaaactctgcacgtaagacatcaatgaaaacaaacc 369
Query: 761 aatcaaagatgaacacaggtaaaagtacagcctgtatagcaataagctgagtaatttt 818
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 370 aatcaaagatgaacacaggtaaaagtacagcctgtatagcaataagctgagtaatttt 427
>3x_Contig559
Length = 2630
Score = 179 bits (90), Expect = 6e-45
Identities = 104/106 (98%), Gaps = 2/106 (1%)
Strand = Plus / Plus
Query: 8 ttgtaaagtcccatgtttgcaagattaacaagcatatacaacaaatcctaatatgggacc 67
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 2527 ttgtaaagtcccatgtttgcaagattaacaagcatatacaacaaatcctaatatggga-c 2585
Query: 68 atataccagagcctagatgtccgaataaaagctttaatagaattgg 113
|||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 2586 atataccagagcctagatgtccgaataaaa-ctttaatagaattgg 2630
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.38 0.712 1.31
Gapped
Lambda K H
1.38 0.712 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5446
Number of Sequences: 1807
Number of extensions: 5446
Number of successful extensions: 29
Number of sequences better than 1.0e-20: 2
length of query: 818
length of database: 10,358,551
effective HSP length: 16
effective length of query: 802
effective length of database: 10,329,639
effective search space: 8284370478
effective search space used: 8284370478
T: 0
A: 40
X1: 6 (12.0 bits)
X2: 15 (29.9 bits)
S1: 12 (24.4 bits)
S2: 50 (100.2 bits)